If I submitted a amendment and didn't get the money for it, and cant find any evidence of submission on the website, how would I go about fixing this

it might take the IRS 8 to 12 weeks before an amended return is processed. 

if its been longer you can either call 800-829-1040 select language then #2 then follow prompts to get to live agent 

or submit another copy.  this time use a service where you get proof of delivery.