Honestly i really dont think so, unless you put down the 0's to make the account number a full 10 to 12 digits long then it most likely will. if there was a problem with you bank and routing number turbo tax should have informed you prior to you submitting your taxes. If your taxes have been submitted and turbo tax hasnt told you there was a problem then yes if should get deposited into your account.
https://sa.www4.irs.gov/irfof/lang/en/irfofgetstatus.jsp
That is the IRS refund status page, on there it will give you a expected date for the direct deposit. if you dont recive your refund 7 days after the date listed then i would be contacting your bank and turbotax to locate your funds.