Were the fees supposed to come out of your federal refund?
If the IRS is taking too long to send your refund you still have to pay the fees in time. After 36 days after your original estimated refund date.
See What if the IRS reduces your refund or delays it.
https://ttlc.intuit.com/community/payments/help/what-if-my-federal-refund-isn-t-enough-to-cover-my-turbotax-fees/00/26313
Then when the IRS does send your refund they won't take the fees out again.
And, Why you got charged,
https://ttlc.intuit.com/community/charges-and-fees/help/why-was-my-bank-account-auto-debited-for-turbotax-fees/00/26102
You should have received about 4 emails asking for the fees. If you don't pay they will debit your account. You had to agree to it.