You may have created a "Wash Sale'
The wash sale rule prohibits taxpayers from claiming a loss on the sale or other disposition of a stock or securities if,
To simplify this:
Wrong assumption regarding wash sale since this is not the case. These were two independent sales and not a wash sale. The stock were purchased at different dates and were sold on the same day. So, what other issue could there be.
I can't explain why one of your transactions did not import. After verifying (compare the TurboTax transaction totals to the 1099-B totals) that the transaction is missing, just manually enter the missing transaction. It will be a lot easier than trying to determine why it did not import.