When you first enter your distribution from an HSA, as reported on Form 1099-SA, the program doesn't yet know that whether or not it was for qualified medical expenses and will initially think it is taxable; until you click the box on the next screen (see screenshot below) that you "...only used it for medical expenses." Once you have indicated that, your refund should go back up (or amount due back down).
it never went back up even though i did tag as all medical.
You'll get Form 1099-SA if you paid for medical or other expenses from your HSA or MSA during the tax year. Don't confuse the 1099-SA with the SSA-1099 which reports Social Security benefits.
As needed, you can take tax-free distributions from your account to pay for qualified medical expenses of the account beneficiary or the beneficiary’s spouse or dependents. You will receive a Form 1099-SA that shows the total amount of your annual distributions (i.e. money you used) reported in box 1. Provided you only use the funds to pay qualified medical expenses, box 3 should show the distribution code No. 1, which indicates normal tax-free distributions.
None of the money received from these plans is taxable if it is spent on "qualified" medical expenses. If the money you withdraw exceeds your qualified medical expenses, however, the excess is subject to income tax. The IRS does not provide an exhaustive list of qualified medical expenses, but it does state an expense is qualified if the taxpayer could report it as an itemized deduction on Schedule A. As a general guideline, the expense should cover the cost of diagnosing, preventing, curing, mitigating or treating a disease. The cost of medical treatment that affects any part of the body is also considered a qualified expense.
If you get a distribution code No. 5 in box 3 of a 1099-SA, it means you did not use all distributions from your account for qualified medical expenses. That means you must report some of the distribution on your tax return.
It's best to enter your 1099-SA before you enter your medical expenses so we can properly calculate your medical expense deduction:
If you are itemizing medical deductions, the amount that you enter as various medical expenses must include the expenses paid with the HSA. Then, when you enter the Form 1099-SA, TurboTax subtract from your Schedule A deductible medical expenses the amount of those paid from the HSA, lowering your Schedule A medical deductions down to only those permitted to be on Schedule A increasing your balance due or decreasing your refund appropriately.