You will file non-resident CA return.
1. Click "My Info" in the left hand menu
2. Scroll down to "Other State Income"
3. Click "Edit"
4. You will need to add CA here
That should trigger a Nonresident CA return. Be sure the W2 income is marked military pay. Additionally, your nephew should visit his finance office to file the correct forms to have CA stop withholding if now a TX resident.
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