After you enter the 1099R and keep going it should ask you if you have any exceptions. What code is in box 7 on 1099R? The 10% Early Withdrawal Penalty is on Schedule 2 line 8 which goes to 1040 line 23 so look on line 23. I'll have to look but there should be a way to visit the penalty section like after you are done with deductions it will ask.
I wouldn't import the 1099R. It might come in wrong. I manually enter mine.
