You did not pay any penalties for the early withdrawal. You only had federal taxes withheld.
The withdrawal is entered on your tax return as ordinary income and taxed at your current tax return. The early withdrawal penalty is 10% of the amount withdrawn and entered on your tax return as a tax liability. Any federal taxes withheld from the withdrawal is entered on your tax return as a tax payment.
If your total tax payments are greater than your total tax liability you will receive a tax refund for the overpayment. If your total tax payments are less than your total tax liability then you will have taxes owed.
