The imputed income should have been reported on your W2, not a 1099-MISC. Box 6 is for payments to physician or other supplier or provider of medical or health care services and this is not correct either. You should contact the employer and ask for a corrected W2. It would be subject to FICA, but not SE tax so the employer should have paid one half.
If you do not receive a corrected W2, see How do I file a substitute W-2 using Form 4852?
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