You do not enter the rollover or replacement under Deductions as a new contribution. That is only for new contributions from your own money. Only enter it from the 1099R. After you enter the 1099R you say No it was not the RMD. Then enter how much you put back or rolled over.
IRA should show up on 1040 line 4a and zero taxable amount on 4b with the word ROLLOVER by it. Unless there was tax withholding taken out that you didn't replace. Then the withholding would be taxable.
