Both of them will handle stock sales and trades. It is a personal choice if you prefer to have the desktop version or the online version.
The one benefit to the desktop version is that you can see the forms directly by switching to forms mode and make edits on the forms in many instances. It is not recommended to make changes on the forms themselves, but sometimes, it is easier to find and correct a number if you find you have entered it incorrectly. The Online version is strictly an interview format and you cannot make any type of changes on the forms.
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