If your Box 5 amount on your 1098-T includes what would normally be reported on a W-2, you will still be reporting it as income; just 'Other Income' instead of 'Wages'.
The difference between Box 1 and Box 5 (and any other Books or Related Fees) will be the taxable other income.
Just enter the 1098-T as it is shown, and TurboTax will put the Other Income in the right place.
Click this link for more info on How to Report Fellowship Stipend.
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