Yes, that is correct. As a resident of PA they will tax you on all income from all sources. However, you can a claim a credit on you PA return for taxes paid to another state. You will find that credit in the PA state interview in the "Taxes and Credits" topic. You can "Update" that section after completing the NY return.
You will need to generate and complete a NY non-resident return for the NY property sale. In the "My Info" section scroll down to the bottom and select NY as a state where you earned income.
Complete the NY state interview and take note of the income taxed by NY and the tax on that income. You will need those numbers for the PA credit interview.
Now you can return to the PA state interview and "Update" the "Taxes and Credits" topic.
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