OK I have California too. After you re entered the whole 1099R did you go to the State tab and start start over for it to update? And you switched to Forms to check the 540 line 71 for withholding? What did you enter for box 14 withholding? Did you also fill in box 16? Box 16 might be blank then you should enter the same as box 1.
Have you updated both the program and your Windows? No matter what I do I can not make CA ignore it.
