Yes, it is all considered as earned in New York. If you worked remotely for a company based in New York, then that income is subject to tax in New York. New York does apply the "Convenience Rule" in that it considers your income earned by your company based in New York, to be New York sourced Income.
You will file a Nonresident State Tax Return for New York and a Residential State Tax Return for California. Prepare your New York State Tax Return first. Then prepare your California State tax Return. This information will allow TurboTax to calculate how much credit California will give you for your taxes paid to New York.
Click here for information on filing tax returns for more than one state.
Click here for more information on multiple state returns.
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