State tax filing

Have you been filing them on Schedule C in your personal return?  On the same Schedule C or 2 separate Schedule Cs?   Unless you incorporated or set up a Partnership or LLC you can't file them separate from your personal return.  You can't just change.  Have you been filing them wrong the last 2 years?  If you really should be filing a separate Business return you better see an accountant right away and get it straightened out.  You may need to amend your returns and file prior year business returns.