@fcrivero
Then as @Mike9241 noted you would have to file a nonresident NY tax return. During the NY non-resident interview you should be able to indicate that none of the W-2 income was NY income. You might have to print and mail-file the NY tax forms, since the withholding exceeds your actual NY income, but I'm not sure that will apply in this case. You'll se when you try to e-file the NY part....if it doesn't let you, then you'll have to print and mail file.
On the My Info page, you have to indicate you had income from another state, and indicate NY as that other state. That will trigger the NY nonresident forms......then you can go to the sate section to complete it (as long as the Federal part is entirely filled out first)
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The reason I asked about telecommuting is that NY assesses income tax on W-2 workers who telecommute to a NY office from out-of-state, and are only telecommuting/working from home when there is no actual Company office or job site in the state they are telecommuting from. The companies located in NY have to strictly follow that rule, or they get in trouble with the NY Tax Dept.
I hope you did talk to your company HR/Payroll people to make sure that was not the case for you, they admit they made a mistake, and that you've had them stop NY withholding long before now.
____________*Answers are correct to the best of my knowledge when posted, but should not be considered to be legal or official tax advice.*
