Federal taxes owed can never be paid from a state tax refund.
What you are seeing on the TurboTax Tax Home webpage is the Net of the tax refund and the taxes owed. It in no way means that federal tax owed have been paid from the state tax refund.
You will receive your full state tax refund from your state, provided they do not make any changes to your tax return.
You will have to pay the federal taxes owed using the procedure you chose in the File section of the program on Step 2.
