What do you mean an "amended" return? What did you do? You are not supposed to amend a rejected return. You can make corrections and re-file or you can print, sign and mail it in. Amending is a special process you only use if your original return was filed, accepted and processed by the IRS but you needed to make an addition or correction by using a Form 1040X.
Did you actually use a Form 1040X? Or when you say you "amended" do you really mean that you just made corrections and e-filed it again?
Please explain exactly what you did so we can help.
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