A few years ago the PDF after filing season ONLY had the as filed forms in it and users complained that they didn't get ALL the useless worksheets so they changed it so the PDF you can get after season ends is the one with EVERYTHING in it and folks still complain. IMHO it is better to have too much than too little.
But you can use the downloaded Amendment program to open the old return and then save just the "as filed" return option in the print center and simply ignore the 1040X in the file.
