After you file

Where are you seeing the State was taken from federal?  Not just at the end when Turbo Tax gives you the net combined amount?  That is only for your info.  You will still get the full refund less any fees you have deducted.  

 

If you have a federal refund the IRS won't withdraw any tax due.  The IRS is only federal.  Your state is separate.  Did you get a State Instruction page saying how the tax due would be paid?  As I said above most states do not accept Direct Debit to pay.