Here's what I would do. Go back in and add the 1099 to Federal so you can file the state right. You won't be able to file state until the Federal (wrong one) is accepted. Click on Add A State to get back into your return.
Then after state is filed and accepted (after federal) you should take out the 1099 from federal and put your return back to the original wrong way. Then you can amend Federal to add the 1099 properly.
But this all depends on the Federal getting accepted on or after Feb 12 when the IRS opens, so you have to wait. If your federal gets rejected then you can just add the 1099 and resend federal and file state.
