If your return is rejected, you can delete the 1099-R and enter it in the correct place.
To delete it, Click on the Federal Taxes tab, wages and income right below.
If you see the Choose What I work on screen next, then choose that option. If you don't see it, then you'll come to a list of all the income types.
Update the W-2 section and delete the W-2.
To enter the 1099-R, scroll down to Retirement and start or update the 1099-R section.
If it's accepted, wait until you receive the original refund or your payment of tax clears. Amended returns are filed on paper in the mail and it takes the IRS 6-12 weeks or more to process them. Don't make any changes in your return until you start the amendment.
You'll have to select and read the amend instructions for the CD/Download product in the link below, although you'll still follow the instructions above when you get to the point of actually making the changes in your return.
https://ttlc.intuit.com/replies/5114064
