I would suggest that you call the IRS to see why money is missing from your return. The most common reason for a reduced refund is an IRS refund offset. A refund offset is when an IRS refund is reduced or intercepted because they discovered something incorrect on your return, to pay off delinquent debt, such as past-due child support, outstanding student loans, or unpaid state income tax.
You'll get an explanatory letter from the Bureau of the Fiscal Service if your refund is offset. The remainder of your refund will be processed as usual. An offset shouldn't delay it unless your entire refund was applied to your debt.
You can call the IRS 1-800-829-1040 and follow the prompts for a live representative. The person that you speak with will have direct access to your tax return and be able to provide you with an update.
Please click this link to learn more about refund offset. https://ttlc.intuit.com/community/refunds/help/what-is-a-refund-offset/00/26301
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