It seems odd that your pdf file would contain both the Schedule D Tax Worksheet and the Qualified Dividends and Capital Gain Tax Worksheet since only one or the other is used when calculating your income tax.
Are line 18 of the Unrecaptured Section 1250 Gain Worksheet and line 9 of the 28% Rate Gain Worksheet both $0? Do you have any long-term capital loss carryover from the previous year?
If the IRS is asking for Schedule D, send them a Schedule D. As I mentioned earlier you can download your tax file and TurboTax amendment software to open your tax file, then open and print Schedule D in forms mode.
