You will need to contact your HSA Administrator to get a corrected 1099-SA for a "Mistaken Distribution." These distributions are not only taxable at your regular income tax rates but you also are hit with a 20% penalty.
Here is a link with more helpful information. You will need to reimburse the HSA for the reimbursement you received. Once you get the corrected 1099-SA you will enter as normal under the "Deductions" tab using the "Medical" topic.
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