Get your taxes done using TurboTax

How did they pay your self employment tax for you?  Did they maybe pay sales tax?  I guess they could have sent in an estimated payment for you.  That is entered separately from your Schedule C.  Then the SE Tax is on your return and you get credit for the estimated payment (like withholding).

 

Or did they just pay you more income to cover the SE tax? You don't handle that any different.  You still will have the self employment tax calculated on your Net Profit.