Get your taxes done using TurboTax

That is not unusual and do NOT make any changes or overrides.  If you have not entered in all your information yet then that may be part of the reason you didn't see a change.   AND the cap gains could be taxed at zero % if you have not entered any other income yet ( see the cap gain worksheet)   AND  the deductions go on a Sch A but only if you have enough to itemize deductions (review that section when you get to it).