It will still go though SBBT but they won't take the fees out again. Maybe the extra $40 Pay with Refund fee if they didn't take that when they charged you.
See, https://ttlc.intuit.com/community/payments/help/what-if-my-federal-refund-isn-t-enough-to-cover-my-t...
Expand What if the IRS reduces your refund, then after step 3......
"The same sequence of events occurs if the IRS is still holding your refund 36 days after your original estimated refund date, except that we'll also debit the Pay With My Refund fee (if any) in Step 3."
