For some reason, the update process is not updating your 8889, which indeed has been ready for a month or more.
First, I want to confirm that you actually closed the TurboTax application and then relaunched it. This will automatically do the Updates. Of course, this should be the same as clicking on Updates under Online (top leftish), but...
Second, for those of you who downloaded TurboTax from TurboTax itself, I would encourage you to redownload the original software from TurboTax.com. This maybe won't have the correct 8889, but the module is clean, so all the updates will be applied the first time you open it (with, one assumes, the updated 8889).
Please see this TurboTax FAQ.
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