Yes when you make the quarterly estimated payments for the SE tax (15.3%) you should include an amount for income tax. (you just pay 1 amount for all) Here's how to calculate the quarterly estimated payments. You start by using your 2015 return.
You can just type W4 in the search box at the top of your return , click on Find. Then Click on Jump To and it will take you to the estimated tax payments section. Say no to changing your W-4 and the next screen will start the estimated taxes section.
OR
To prepare the quarterly estimated tax forms 1040ES for next year go to
Federal Taxes or Personal (H&B version)
Other Tax Situations
Other Tax Forms
Form W-4 and Estimated Taxes - Click the Start or Update button
Or here are the 1040ES instructions and blank forms
http://www.irs.gov/pub/irs-pdf/f1040es.pdf The 1040ES quarterly estimates for 2016 are due April 18, June 15, Sept 15 and Jan 17, 2017. Your state will also have their own estimate forms. You mail in the estimates with a check or you can do it electronically at the IRS and maybe your state.
Or if you have the Desktop Software, Go to Forms Mode. Click Forms in the top right (left for Mac). Then click the Open Forms box in the top of the column on the left. Open the US listing of forms and towards the bottom find them near the bottom of the US list. Click the plus sign by Estimated Taxes and Form W-4 Worksheet, then the plus sign by Estimated Tax Options. You can override the amounts.
If you didn't owe or missed making the prior quarterly estimated payments and need to just calculate starting now, you can go though the Estimated Taxes section and just put $1 (one dollar) in for the quarters you missed. Then it will only figure the current and remaining quarters.
