You were supposed to put ALL of your W-2's on the SAME tax return. You do not file them as separate tax returns. You can only file one tax return per taxpayer, so whatever you did with the second one could not have gone through. You need to wait for your tax refund (from the first and only acceptable tax return) to arrive and then you can amend your tax return to include the other W-2. Going forward, never file a tax return unless you have included ALL of your income on that tax return.
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