Delete the Form 1099-R and re-enter manually.
Does box 7 of the 1099-R have a G code entered for a rollover? Did you indicate in the follow-up questions that this was a rollover to another tax deferred account?
Box 5a on the Form 1040 should have the amount from box 1 of the 1099-R and box 5b should have a 0 entered. With the word ROLLOVER entered on the left of Line 5b.
Have entered multiple times using test accounts and the software has always performed as expected on the federal tax return with this type of 1099-R and a rollover.
