Yes. You can file a NJ Married Filing Jointly Non-Resident return that includes both of you on the return, then make an adjustment to income removing your income that was not earned in the state and her income that was not earned in the state when asked to do so in the interview questions for NJ.
Married/CU couples both nonresidents: Only one has New Jersey income If you and your spouse were nonresidents for the entire tax year, and only one of you has income from New Jersey sources, the spouse with income from New Jersey may file a nonresident return using the Married/Civil Union Filing Separately status. The spouse may also use that status, even if you filed a joint federal return. You have the option of filing a joint nonresident return, but you will have to combine your income and deductions
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