Did you import the 1099R? You need to go though the 1099R section and make sure it imported right and answer all the followup questions. The withholding is in box 4 for federal and box 14 for state. The federal withholding will show up on 1040 line 25b.
1099R is under
Federal Taxes
Wages & Income
Then scroll way down to Retirement Plans and Social Security
Then IRA, 401(k), Pension Plan Withdrawals (1099-R)
