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You only enter it from the 1095-A. When you enter the 1095A there should be a box to check for self employment.  If you enter the 1095-A and select the "Self-employed and bought a Marketplace plan" box, it will automatically include those premiums in the SE Health Insurance section. So you shouldn't enter it again on schedule C.  And the repaid amount is a circular calculation.  Turbo Tax handles it.  


Self Employed health Insurance does not go directly on Schedule C so it will not reduce your Net Profit or self employment tax.


If it does exceed your net self-employment income it gets split automatically. An amount equal to your net self-employment income goes on Form 1040 Schedule 1, and the remainder gets added in to medical expenses on Schedule A.