Yes, the filing will be the same. Your marital status on 31 Dec was married so generally your options are Married Filing Jointly or Married Filing Separately. Whichever you choose at the federal level you use for MN.
If you file jointly, you can allocate to MN what belongs to MN from your joint incomes.
If you file separately, you will only use your MN income on your MN return.
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