No. The $39 is only if you use the option to pay the TurboTax online account fees with the federal tax refund.
Note - There is a 2.49% convenience fee to pay the taxes owed by credit card through TurboTax.
If you are going to use the credit card to pay the federal taxes owed, go to this IRS website for credit card processors with lower fees - https://www.irs.gov/payments/pay-your-taxes-by-debit-or-credit-card
