There are different spots in the software to add W-2's and the self-employment income. All of it can go on the same tax return. When you file a joint return, you have spots for each name on the income screens. The screen for W-2's will have spots for your spouse and for you. After you enter the first W-2 you will just need to click Add W-2 and enter the other ones, being careful to enter them under the right name. And for the self-employment income you will enter that under your name in a different part of the software. When you actually get the software it will be more apparent to you where you have to enter it.
https://ttlc.intuit.com/community/self-employed/help/how-do-i-report-income-from-self-employment/00/...
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