If only 2 people in your household would be getting insurance through the Marketplace, you would just enter the 1095-A for those people. The 1095-A would come with just you and your daughters name and SSN on it. As you walk through the steps of entering the 1095-A it will ask you who the coverage was for.
However, if you are saying that your wife makes too much money and puts the household income over the limit for the Premium Tax Credit, then neither you nor your daughter would be eligible for the credit. (being eligible for the credit is not the same as eligibility for the insurance plans) The Premium Tax credit is based on household income, not individual income.
If you would choose to file Married Filing Separate, you generally would not be eligible for the credit regardless of household income.
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