Self employed

I am wondering why you have a schedule C. Normally, you would receive a W-2 form reporting your wages from your clergy work and after entering it you would indicate that you had a parsonage allowance and later on indicate that you want self-employment taxes to apply to the parsonage allowance. If you did this, there would be no schedule C generated. So, you need to see if you ordered the self-employment tax to apply to your wages and also completed a schedule C, as that would duplicate your self-employment tax.

You would see this after you entered your W-2 form, that is where the self-employment tax would  come from.