Please clarify what type of payments you needed to allocate. Did you mean to make a payment with an extension?
Filing an extension in TurboTax does not cause your return to be filed. We have reported to the developers that customers have expressed concern about the language in the extension section mentioning "return" and it will be revised before next tax season.
In the meantime, did you click the button to Transmit your returns? That is the last step in the File section. If you have already e-filed your returns, don't make any changes until you receive confirmation that your return has been filed and accepted.
If you have not yet transmitted your returns, you can still make changes if you go back to the File section. See this TurboTax help article for more information.
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