I am active duty, my spouse claims my SOR - KY. She works in IN. It is saying she owes Ky state taxes, which should not be due to me being military. How to I avoid this?

Last year we simply filed 1040 form with reciprocal nonresident IN form IT-40RNR for state taxes. We did use an accountant and not TurboTax though. With filing through Turbotax this year it is stating she owes KY state taxes.