Please see the instructions for line 20 in the NC Instructions.
I suspect that what will happen is when you enter your 1099-R for the pension, that when TurboTax sees that you are a NC resident, that it will ask (right after you enter the 1099-R numbers), it will ask you about the source of the pension (military or not).
Just pay attention to the questions, because I believe that TurboTax will take care of this...
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