401k rollover to traditional IRA then withdrawal from traditional IRA

I rolled over $9000 from 401k to a traditional IRA account (both different companies) then I withdrew that $9000 to help pay for mortgage down payment as a first time homebuyer.  I got two 1099Rs from the different retirement companies.  I entered both into the retirement forms and they are counted double as $18,000 withdrawal, one taxable (IRA withdrawal) and the other non-taxable (rollover).  Shouldn't it only count once in the total of $9000.  How can Turbotax calculate this as one amount, what do I need to do differently?  Please advise. Thanks.