Retirement tax questions

Hi, there.

Here's my situation: We received our 1099R pension check. That's amount is fine. Then we rolled over an amount from our pension fund. We rolled it over to a different IRA account. The 1099R for that one says 7-G. But TT wants to add it in to total income.

Then from that IRA we rolled over, we received an amount with taxes taken out. That's fine. 

I can't seem to figure out WHY or WHAT to do about the fact that on our 1040 it is including all three 1099r's as income. 

It does say ROLLOVER on the 1040. But the amount on line 4D is adding both the regular Pension, plus the ROLLOVER amount. 

Is this something you could help with?

Thanks.