Retirement tax questions

Have contacted the indirect IRA rollover destination Vanguard; they tell me they send out a form 5498 in May, confirming the rollover.   They say no 1099-R will come from them, as that form is only for distributions.  I now have the 1099-R from the source of the distribution, but it is showing as taxable in my Turbo Tax.   How to I correctly reconcile an indirect IRA rollover to ensure I'm not paying tax on the proceeds?