TurboTax sees that there are no longer nonzero amounts on the From 5329, so it doesn't print it. I really think that you need to include a Form 5329 with zeros replacing the original amounts so that you will be explicitly changing the original. Absent that form, it seems that your original would be unchanged. You'll need to prepare this Form 5329 manually since TurboTax won't do it for you.
