RMD

I have 2 IRA accounts that more than satisfied my RMD.  I've entered both 1099R's (just one would satisfy the RMD) and form 5329-T doesn't recognize them.  I put in the RMD from my financial account, who says I met it 100%, and entered the 2 1099R's and said to apply both to the RMD.  However form 5329-T show a penalty.

   What can I do?  How do I fix this?