"Am I able to roll over any of these profits into my IRA's or am I stuck paying short term capital gains on these? "
Only the amount originally distributed from the 401(k) can be deposited into the IRA as the nontaxable rollover originally reported on your 2022 tax return. What you completed is a late rollover of only those funds. The results of the trading outside of the IRA must remain outside of the IRA.
